Work log

This is an auto-generated list of all commits (saves) that I’ve made to the repository.

The following is a log of the work completed for this project

2025-07-18

• editing fuels discussion, minor fixes to fuels results

2025-07-17

• Continuing with revising discussion to reflect results: finished basal area

2025-07-16

• Began refining discussion text

2025-07-04

• finised working through revised results, inline values reference data

2025-06-29

• Continuing to redo results now working on fuels

2025-06-13

• almost done with regen results narrative
• Some past work plus implemented data structure to extract result values inline

2025-05-16

• new workflow for interpreting models with marginaleffects and emmeans

2025-04-11

• update packages, delete _freeze and re-render all, fix errors

2025-03-07

• mostly minor edits across several sections

2025-02-16

• one more file for JD

2025-02-07

• put fuel export in right place
• add fuel transect data export
• Another couple weeks of slow editing

2025-01-31

• continued work on rw and to basal area discussion

2024-12-14

• try to push website
• Merge branch ‘main’ of https://github.com/fisher-j/multi-age
• large load
• Create test.md
• Update README.md
• fix readme link

2024-09-07

• Re-starting again fall 2024

2024-05-06

• incorporate pascal edits
• rename model
• rw/to comparison

2024-05-02

• switch to apa
• re-render
• render changes
• minor adjust
• refine sprout dynamics section
• refine effect thinning fuel

2024-04-26

• developing sprout section

2024-04-25

• developing sprout intro

2024-04-22

• revise thinning effects summary
• starting sprout lit review

2024-04-17

• thinning effects summary

2024-04-11

• completed results

2024-04-08

• most of thesis results section

2024-04-05

• touched up regen analysis figures

2024-04-04

• ht increment interp

2024-04-03

• interpret fuel results

2024-03-28

• minor adjust post-pct fuel models again
• minor adjust post-pct fuel mods

2024-03-27

• add regen species models

2024-03-25

• add BA by spp and treat boxplot
• include more regen models
• regen clump minor species
• include analyze regen model

2024-03-21

• model for post-pct fuel

2024-03-20

• render site
• include glmmTMB model and residual check

2024-03-19

• fix some wrong azimuths
• change shape of total_load

2024-03-11

• clean up files, save rdata with .rda extension

2024-03-08

• accomodate for new data
• rename data and add phase and timestamp columns
• create postpct fuel data
• add notes to slides

2024-03-05

• sampling review slide
• presentation version 3

2024-03-04

• near final draft of committee presentation
• save data
• finish 1st draft of presentation slides

2024-02-26

• first draft of presentation

2024-02-14

• explore basal area
• refactor for thesis

2024-02-08

• create b/w compatible site map
• Second view of regen data

2024-02-07

• replace some 0’s with blanks
• first view of regen data
• Add some data cleaning steps

2024-02-06

• start data exploration
• wrangle regen data
• remove unecessary files

2024-02-05

• compare predictions between year-10 and all-years models
• add ht109 model: gausian family
• compare distribution of predicted values to observed
• automate work log from git log
• create site map and add data
• add regen data
• refactor chapters

2024-02-01

• random changes, don’t use normal overlay in fuel data exploration

2024-01-31

• Minor fix, add transect photos

2023-12-20

• glmm for multi-year and 10 year

2023-12-15

• build webpage
• added model 11
• refined year 10 only, integrate with multi-year
• create 10-year model and compare

2023-12-13

• lots

2023-12-07

• refining initial models, visualizing output

2023-12-06

• Add some basic models
• fixed height by plot graph
• Wrapping up summary, moving on to modeling

2023-12-04

• Starting to look at project again

2023-08-25

• Begin lme4 modeling
• recalculate grouping variables
• Visualizations of data Site and Plot variability

2023-08-24

• minor edit
• minor figure adjustment
• draw sampling design
• misc
• nesting description
• Height vs SDI and Year fig

2023-08-22

• variable descriptions
• species ht compare fig
• started sprouts

2023-08-21

• thoughts on future development

2023-08-19

• some files that didn’t get committed

2023-08-18

• final section: R2, ESS, interpretation, refined figures

2023-08-15

• added model, interpretation, figure refinement

2023-08-11

• refined priors

2023-08-08

• A bunch of changes again.

2023-07-27

• gammma model

2023-07-18

• bayesian analysis

2023-07-07

• hypothesis test, bootsrap, heterogeneity

2023-07-03

• multi-level model

2023-06-30

• explore more distributions

2023-06-29

• explore other distributions, zeros

2023-06-28

• added histograms + normal curves

2023-06-27

• forgot these files
• test normality

2023-06-20

• added captions
• look at outliers in fuel data

2023-06-16

• interpret fuel load summary

2023-06-15

• clean up code blocks
• Improve presentation of fuel loading from literature

2023-06-14

• minor website change
• summarize total fuel loading

2023-06-13

• complete vegetation loading
• website
• complete dufflitter fuel loading

2023-06-12

• work on duff/litter, values from lit.

2023-06-08

• fix problems, render site
• deleted
• first data test, new test scripts file

2023-06-05

• fuel loading background and parameters

2023-06-01

• minor project updates
• figure out how to pivot longer
• deleted files
• data entry

2023-05-31

• fuel sampling layout figure dxf->pdf->svg->png
• added to data variable descriptions
• fixed typo in datasheet
• function to combine all fuel datasheets in a folder

2023-05-30

• data entry and work on data description

2023-05-26

• some data entry
• First week of work

2023-05-22

• initial commit